STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0386Transcription regulator, ArsR family 5; COG1777. (236 aa)    
Predicted Functional Partners:
CL1_0387
Ferredoxin; COG1145.
     
 0.821
CL1_0388
Geranylgeranyl hydrogenase; Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3- diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2,3-di-O-phytanyl-sn-glyceryl phosphate) from 2,3-di- O-geranylgeranylglyceryl phosphate (DGGGP) via the hydrogenation of each double bond of the isoprenoid chains.
     
 0.821
CL1_0385
Glutaredoxin-like protein 2; COG0526.
       0.629
CL1_1211
Hypothetical protein; COG1549.
  
     0.622
CL1_1591
Hypothetical protein.
  
     0.622
CL1_0494
Hypothetical protein; COG1226.
  
     0.608
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
  
     0.601
CL1_0507
Glycosyl transferase family protein 6; COG1807.
  
     0.599
CL1_1103
Hypothetical protein; COG0535.
  
     0.564
CL1_0499
Major facilitator superfamily permease 4; COG0477.
  
     0.555
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.