STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0418Hypothetical protein; COG1073. (286 aa)    
Predicted Functional Partners:
CL1_0419
Major facilitator superfamily permease 2; COG0477.
 
     0.947
CL1_0420
Major facilitator superfamily permease 3; COG0477.
 
     0.867
CL1_0421
Glycerophosphoryl diester phosphodiesterase 1; COG0584.
 
   
 0.839
CL1_0422
Glycerophosphoryl diester phosphodiesterase 2; COG0584.
 
   
 0.811
CL1_0417
Hypothetical protein containing glycoside hydrolase/ deacetylase domain; COG3233.
  
    0.730
CL1_0151
Putative ATP-dependent protease Lon; COG1067; Belongs to the peptidase S16 family.
    
 0.596
CL1_0686
Putative thioesterase; COG2050.
    
 0.528
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.