STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0421Glycerophosphoryl diester phosphodiesterase 1; COG0584. (250 aa)    
Predicted Functional Partners:
CL1_0422
Glycerophosphoryl diester phosphodiesterase 2; COG0584.
 
  
 
0.977
CL1_0420
Major facilitator superfamily permease 3; COG0477.
 
   
 0.778
CL1_0418
Hypothetical protein; COG1073.
 
   
 0.665
CL1_0419
Major facilitator superfamily permease 2; COG0477.
 
     0.644
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
  
  
 0.518
CL1_1475
Glucose-1-phosphate thymidylyltransferase-like protein; COG1213; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 
 0.510
CL1_1601
Asparagine synthase; COG0367.
     
 0.437
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.