STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0463Cobalt ABC transport protein, CbiN; COG0310. (82 aa)    
Predicted Functional Partners:
CL1_0464
Cobalt ABC transporter permease 1, CbiQ; COG0619.
  
 
 0.991
CL1_0462
Cobalt ABC transporter permease, CbiM; COG0310.
  
 
 0.990
CL1_0465
Cobalt ABC transporter ATPase 1; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
 
 0.985
CL1_1242
Formylmethanofuran dehydrogenase subunit E; COG2191.
  
    0.840
nop10
Putative H/ACA RNA-protein complex component Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.
       0.758
CL1_0461
Hypothetical protein; COG2047.
       0.758
eif2a
Translation initiation factor IF-2 subunit alpha; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family.
       0.756
CL1_1695
Cobalt ABC transporter permease 2, CbiQ; COG0619.
  
  
 0.600
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA.
       0.418
rps27e
30S ribosomal protein S27e; COG2051.
       0.418
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.