STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0531IS element ISTsi1 orfB trasposase; COG0675. (393 aa)    
Predicted Functional Partners:
CL1_0532
Site-specific integrase-resolvase; COG2452.
 
  
 0.938
CL1_0452
Putative Transposase, IS605-family; COG0675.
  
   
 0.500
CL1_1763
Hypothetical protein; COG1672.
  
     0.461
CL1_0053
Putative ATPase (AAA+ superfamily) 4; COG1672.
  
     0.446
CL1_1438
Putative ATPase (AAA+ superfamily) 3; COG1672.
  
     0.443
CL1_0823
Putative ATPase (AAA+ superfamily) 1; COG1672.
  
     0.441
CL1_1073
Hypothetical protein; COG1673; Belongs to the UPF0310 family.
  
     0.436
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.