STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0546Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family. (663 aa)    
Predicted Functional Partners:
CL1_0412
Alpha-glucan phosphorylase; COG0058.
 
  
 0.953
CL1_0882
Glycogen synthase; COG0297.
 
 0.946
CL1_0972
4-alpha-Glucanotransferase; COG1449.
 
  
 0.930
CL1_0091
Pullulanase type II; COG0366.
 
  
 0.929
CL1_0884
Cyclomaltodextrinase; COG0366.
    
 0.918
CL1_1040
Cytoplasmic alpha-amylase; COG0366.
     
  0.900
CL1_1421
Glycosyl transferase family 1 protein; COG0438.
  
 0.885
CL1_0545
Nitrogen regulatory protein P-II (glnB); COG0347; Belongs to the P(II) protein family.
  
    0.738
CL1_0547
Hypothetical protein containing fibronectin-binding protein; COG1293.
       0.721
CL1_0888
Amylopullulanase; COG1449.
 
   
 0.638
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.