STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_0638Glutamate synthase beta chain-related oxidoreductase containing 2Fe-2S and 4Fe-4S clusters; COG0493. (952 aa)    
Predicted Functional Partners:
CL1_0639
NADH-quinone oxidoreductase subunit F; COG1894.
 
 
 0.998
CL1_0640
NADH-quinone oxidoreductase subunit E; COG1905.
  
 
 0.997
CL1_0643
Sulfhydrogenase II, delta chain; COG1941.
   
 
 0.960
CL1_0642
Sulfhydrogenase II, gamma chain; COG0543.
   
 
 0.900
CL1_0013
2-oxoglutarate ferredoxin oxidoreductase subunit delta; COG1146.
  
  
 0.859
pyrD
Putative dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate.
 
 
 0.847
CL1_0424
Anaerobic glycerol-3-phosphate dehydrogenase subunit A; COG0579.
  
 
 0.838
CL1_0679
Indolepyruvate ferredoxin oxidoreductase, alpha subunit 1; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
  
 
 0.837
CL1_1415
Indolepyruvate ferredoxin oxidoreductase, alpha subunit 2; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
  
 
 0.837
CL1_1143
Hypothetical protein containing ferredoxins domain 1; COG0437.
  
 
 0.834
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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