STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0708ABC type iron(III) transporter permease; COG1178. (541 aa)    
Predicted Functional Partners:
CL1_0709
ABC type sugar transporter ATPase; COG3839.
 
 
  0.991
CL1_1711
Thiamine ABC transporter periplasmic binding protein; COG4143.
 
 
 0.966
CL1_0707
Putative aminopeptidase 1; COG3191.
       0.839
CL1_1687
iron(III) ABC transporter periplasmic protein; COG1840.
 
  
 0.785
CL1_0711
Putative xanthine/uracil permease 2; COG2252.
       0.740
CL1_1514
Molybdate/tungstate ABC type transporter ATPase; COG3839.
 
    0.706
CL1_0434
Hypothetical protein containing HAD-like domain 3; COG1011.
       0.585
CL1_1685
iron(III) ABC transporter ATPase; COG3839.
 
    0.580
CL1_0985
Hypothetical protein; COG3379.
  
   
 0.481
CL1_0710
Hypothetical protein.
       0.410
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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