STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0709ABC type sugar transporter ATPase; COG3839. (334 aa)    
Predicted Functional Partners:
CL1_0708
ABC type iron(III) transporter permease; COG1178.
 
 
  0.980
CL1_1711
Thiamine ABC transporter periplasmic binding protein; COG4143.
 
  
 0.847
CL1_1686
iron(III) ABC transporter permease; COG1178.
 
    0.651
CL1_0707
Putative aminopeptidase 1; COG3191.
       0.550
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
 
   
 0.529
CL1_1513
Molybdate/tungstate ABC type transporter permease; COG0555.
    0.528
CL1_0887
Maltooligosaccharide transport system permease protein 2; COG3833.
 
   
 0.496
CL1_0710
Hypothetical protein.
       0.410
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.