Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_0713Segregation and condensation protein B; COG1386. (201 aa)    
Predicted Functional Partners:
CL1_1614
Chromosome segregation and condensation protein ScpA-like protein; COG1354.
 
 
 0.997
CL1_0714
Replication factor A; COG1599.
 
     0.865
CL1_0715
Replication factor A complex, RPA14 subunit.
       0.820
CL1_0716
Replication factor A complex, RPA32 subunit; COG3390.
       0.820
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.749
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
 
 
 0.487
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
  
  
 0.486
CL1_0408
Hypothetical protein; COG1658; Belongs to the UPF0292 family.
  
    0.414
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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