STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0713Segregation and condensation protein B; COG1386. (201 aa)    
Predicted Functional Partners:
CL1_1614
Chromosome segregation and condensation protein ScpA-like protein; COG1354.
 
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.765
CL1_0714
Replication factor A; COG1599.
 
     0.702
CL1_1720
Putative Serine/threonine protein phosphatase; COG0631.
 
 
 0.606
CL1_0715
Replication factor A complex, RPA14 subunit.
       0.601
CL1_0716
Replication factor A complex, RPA32 subunit; COG3390.
       0.601
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
  
    0.514
hflX
GTP-binding protein, HflX family; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
     
 0.470
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
     0.466
CL1_0135
Putative transcription regulator containing CBS-domain; COG3620.
 
     0.415
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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