STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0819Hypothetical protein; COG0457. (341 aa)    
Predicted Functional Partners:
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
  
 0.651
CL1_0698
DNA polymerase, family B; COG0417.
 
 
 0.650
CL1_1722
Hypothetical protein containing WD40 repeat; COG2319.
 
 0.637
CL1_0168
Hypothetical protein containing peptidase M50 domain 1; COG0750.
 
 0.625
rpoD
DNA-directed RNA polymerase subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family.
 
 0.625
CL1_1728
Hypothetical protein; COG2319.
 
 0.622
CL1_0927
alanyl-tRNA synthetase 1; COG2872.
 
 
 0.600
CL1_1810
Hypothetical protein containing alanyl tRNA synthase domain; COG2872.
 
 
 0.599
CL1_0366
Putative arginase; COG0010; Belongs to the arginase family.
 
  
 0.572
CL1_0223
Putative TBP-interacting protein DNA helicase Tip49-like protein; COG1224.
   
 0.569
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.