STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_0839Putative oligosaccharyl transferase, STT3 subunit 1; COG1287. (789 aa)    
Predicted Functional Partners:
CL1_0840
Sugar-phosphate nucleotidyltransferase 2; COG1208.
     
 0.784
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
     0.722
CL1_1815
CRISPR-associated protein Cas5; COG1688.
  
   
 0.648
CL1_1095
Hypothetical protein; COG1361.
  
     0.636
CL1_1964
Hypothetical protein; COG1672.
  
     0.625
CL1_0376
CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.604
CL1_0415
Phospho-sugar mutase-like protein; COG1109.
 
  
 0.597
CL1_0172
Glycosyl transferase family protein 5; COG5305.
 
     0.582
CL1_0494
Hypothetical protein; COG1226.
  
     0.573
CL1_1332
Transcription regulator, AbrB/SpoV family; COG0704.
  
     0.563
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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