STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0850Glycoside hydrolase family 57 protein; COG0366. (1210 aa)    
Predicted Functional Partners:
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
 
   
 0.644
CL1_0882
Glycogen synthase; COG0297.
 
  
 0.618
CL1_0888
Amylopullulanase; COG1449.
     
 0.611
CL1_0884
Cyclomaltodextrinase; COG0366.
 
   
 0.606
CL1_1275
Cyclomaltodextrin glucanotransferase; COG0366.
 
   
 0.606
CL1_0091
Pullulanase type II; COG0366.
 
   
 0.516
CL1_0887
Maltooligosaccharide transport system permease protein 2; COG3833.
 
   
 0.509
CL1_0885
Maltooligosaccharide transport system substrate-binding protein; COG2182.
 
   
 0.505
CL1_1974
Hypothetical protein containing PIN domain 19; COG4113.
  
     0.489
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
 
   
 0.487
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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