Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0851Hypothetical protein; COG4743. (334 aa)    
Predicted Functional Partners:
CL1_0845
Hypothetical protein.
 
    0.873
CL1_0847
Hypothetical protein; COG1721.
 
    0.696
CL1_0842
Hypothetical protein.
       0.658
CL1_0843
Hypothetical protein.
       0.658
CL1_0846
Putative AAA-type ATPase chaperone 1; COG0714.
       0.630
CL1_0860
Hypothetical protein; COG0647.
       0.622
CL1_0829
Hypothetical protein; COG1817.
 
     0.617
CL1_0844
Hypothetical protein.
       0.612
CL1_0861
Hypothetical protein; COG1201.
       0.596
CL1_1646
Hypothetical protein; COG1967.
  
   
 0.521
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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