STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0858Lps biosynthesis rfbU-like protein; COG0438. (374 aa)    
Predicted Functional Partners:
CL1_0857
Glycosyl transferase family protein 3; COG0463.
 
  
 0.913
CL1_0856
Glycosyl transferase family protein 2; COG0438.
    
0.904
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.584
CL1_1971
Glycosyl transferase family 2 protein 3; COG0463.
 
  
 0.579
CL1_0859
Putative oligosaccharyl transferase, STT3 subunit 2; COG1287.
     
 0.549
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.498
CL1_0828
Glycosyl transferase family protein 7; COG0463.
 
  
 0.489
CL1_1795
UDP-glucose 4-epimerase; COG0451.
 
  
 0.455
CL1_0841
Putative UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase; COG0451.
 
  
 0.446
CL1_0861
Hypothetical protein; COG1201.
  
    0.423
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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