STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0858Lps biosynthesis rfbU-like protein; COG0438. (374 aa)    
Predicted Functional Partners:
CL1_0857
Glycosyl transferase family protein 3; COG0463.
 
  
 0.916
CL1_0856
Glycosyl transferase family protein 2; COG0438.
    
0.905
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
  
 0.616
CL1_1971
Glycosyl transferase family 2 protein 3; COG0463.
 
  
 0.594
CL1_0859
Putative oligosaccharyl transferase, STT3 subunit 2; COG1287.
     
 0.562
CL1_0748
Glycosyl transferase family 2 protein 2; COG0463.
 
  
 0.558
CL1_0418
Hypothetical protein; COG1073.
   
 
 0.553
CL1_0828
Glycosyl transferase family protein 7; COG0463.
 
  
 0.507
CL1_1795
UDP-glucose 4-epimerase; COG0451.
 
  
 0.497
CL1_0841
Putative UDP- or dTTP-glucose 4-epimerase or 4-6-dehydratase; COG0451.
 
  
 0.489
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.