STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0859Putative oligosaccharyl transferase, STT3 subunit 2; COG1287. (775 aa)    
Predicted Functional Partners:
CL1_0857
Glycosyl transferase family protein 3; COG0463.
  
 
 0.615
CL1_0860
Hypothetical protein; COG0647.
       0.597
CL1_0861
Hypothetical protein; COG1201.
       0.595
CL1_0856
Glycosyl transferase family protein 2; COG0438.
     
 0.562
CL1_0858
Lps biosynthesis rfbU-like protein; COG0438.
     
 0.562
rpl13
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.539
rpl30
50S ribosomal protein L30; COG1841.
  
 
 0.530
rpl18
50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.525
rpl32e
50S ribosomal protein L32e; COG1717; Belongs to the eukaryotic ribosomal protein eL32 family.
  
   0.523
rpl21e
50S ribosomal protein L21e; COG2139; Belongs to the eukaryotic ribosomal protein eL21 family.
   
 
 0.522
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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