STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0861Hypothetical protein; COG1201. (144 aa)    
Predicted Functional Partners:
CL1_0860
Hypothetical protein; COG0647.
       0.916
CL1_0863
Hypothetical protein containing phosphoribosyltransferase-lilke domain 2; COG2236.
       0.616
CL1_0851
Hypothetical protein; COG4743.
       0.596
CL1_0859
Putative oligosaccharyl transferase, STT3 subunit 2; COG1287.
       0.592
CL1_0862
Ribonucleoside-diphosphate reductase subunit alpha; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.521
CL1_0842
Hypothetical protein.
       0.449
CL1_0857
Glycosyl transferase family protein 3; COG0463.
       0.425
CL1_0856
Glycosyl transferase family protein 2; COG0438.
  
    0.423
CL1_0858
Lps biosynthesis rfbU-like protein; COG0438.
  
    0.423
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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