STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0880Hypothetical protein containing SAM domain 4; COG2108. (361 aa)    
Predicted Functional Partners:
rnp2
Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
    0.657
CL1_1362
Putative transcriptional regulator; COG1709.
  
     0.630
CL1_1736
Hypothetical protein; COG0175.
  
     0.549
CL1_0879
Hypothetical protein.
       0.536
CL1_0878
Hypothetical protein; Possibly the antitoxin component of a toxin-antitoxin (TA) module.
       0.516
CL1_0877
Hypothetical protein containing PIN domain 17; COG1487.
       0.510
CL1_1455
Hypothetical protein; COG1931; Belongs to the UPF0201 family.
  
     0.499
CL1_0704
Hypothetical protein; COG2237.
 
     0.497
CL1_1276
Hypothetical protein; COG0175.
  
     0.435
CL1_0278
Hypothetical protein; COG1031.
 
     0.432
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.