STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0882Glycogen synthase; COG0297. (448 aa)    
Predicted Functional Partners:
CL1_0412
Alpha-glucan phosphorylase; COG0058.
 
  
 0.980
CL1_0254
Ornithine carbamoyltransferase; COG0078; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.972
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
 
 0.946
CL1_0972
4-alpha-Glucanotransferase; COG1449.
 
 
 0.932
CL1_0884
Cyclomaltodextrinase; COG0366.
 
  
 0.866
CL1_0091
Pullulanase type II; COG0366.
 
  
 0.758
CL1_0888
Amylopullulanase; COG1449.
 
  
 0.716
CL1_1770
Fe-containing alcohol dehydrogenase; COG1454.
   
  
 0.706
CL1_0883
Putative transcription regulator, TrmB family; COG1378.
       0.694
CL1_1275
Cyclomaltodextrin glucanotransferase; COG0366.
 
  
 0.680
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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