STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CL1_0883Putative transcription regulator, TrmB family; COG1378. (340 aa)    
Predicted Functional Partners:
CL1_0882
Glycogen synthase; COG0297.
       0.862
CL1_0884
Cyclomaltodextrinase; COG0366.
     
 0.844
CL1_0885
Maltooligosaccharide transport system substrate-binding protein; COG2182.
     
 0.795
CL1_0890
Hypothetical protein; COG1255; Belongs to the UPF0146 family.
       0.718
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
     
 0.711
CL1_0891
Phosphopentomutase; COG1109; Belongs to the phosphohexose mutase family.
       0.637
CL1_0887
Maltooligosaccharide transport system permease protein 2; COG3833.
       0.634
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
   
    0.621
tbp
TATA-box binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
  
   
 0.575
pfdB
Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
   
 0.543
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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