STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0883Putative transcription regulator, TrmB family; COG1378. (340 aa)    
Predicted Functional Partners:
CL1_0882
Glycogen synthase; COG0297.
       0.694
CL1_0884
Cyclomaltodextrinase; COG0366.
     
 0.662
CL1_0824
Hypothetical protein containing Trimeric LpxA-like domain; COG0110.
   
    0.606
CL1_0885
Maltooligosaccharide transport system substrate-binding protein; COG2182.
     
 0.499
CL1_1143
Hypothetical protein containing ferredoxins domain 1; COG0437.
   
    0.461
CL1_1147
Hypothetical protein containing ferredoxins domain 3; COG0437.
   
    0.461
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
     
 0.418
pfdB
Prefoldin beta subunit; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
  
   
 0.404
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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