STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0890Hypothetical protein; COG1255; Belongs to the UPF0146 family. (136 aa)    
Predicted Functional Partners:
CL1_0891
Phosphopentomutase; COG1109; Belongs to the phosphohexose mutase family.
       0.793
CL1_0888
Amylopullulanase; COG1449.
  
    0.747
CL1_0889
Maltooligosaccharide transport system ATP-binding protein; COG3839.
       0.697
CL1_0886
Maltooligosaccharide transport system permease protein 1; COG1175.
       0.670
CL1_0887
Maltooligosaccharide transport system permease protein 2; COG3833.
       0.670
CL1_0885
Maltooligosaccharide transport system substrate-binding protein; COG2182.
       0.597
CL1_0884
Cyclomaltodextrinase; COG0366.
       0.401
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.