STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0908Hypothetical protein; COG2083; Belongs to the UPF0216 family. (135 aa)    
Predicted Functional Partners:
CL1_0907
Hypothetical protein; COG1290.
       0.818
CL1_0906
Hypothetical protein.
       0.716
CL1_0909
Glutamine synthetase; COG0174; Belongs to the glutamine synthetase family.
       0.588
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.551
CL1_0408
Hypothetical protein; COG1658; Belongs to the UPF0292 family.
  
     0.541
CL1_2020
Putative phosphatidylglycerophosphatase A; COG1267.
 
     0.517
CL1_0630
Hypothetical protein; COG1423.
  
     0.450
CL1_0282
DNA-directed RNA polymerase subunit F; COG1460.
  
     0.448
CL1_1692
Hypothetical protein; COG1967.
 
     0.434
CL1_0698
DNA polymerase, family B; COG0417.
 
     0.430
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.