STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0924Hypothetical protein; COG0037. (276 aa)    
Predicted Functional Partners:
CL1_0923
Hypothetical protein.
       0.733
CL1_0920
Hypothetical protein; COG0535.
 
     0.703
CL1_1313
Replication factor C small subunit; COG1372.
 
     0.643
CL1_0104
Putative ATPase 1; COG0037.
 
     0.610
CL1_0897
Hypothetical protein containing SAM domain 5; COG0500.
 
 
 0.608
CL1_0921
ABC type dipeptide/oligopeptide/nickel transporter permease 1; COG0601.
       0.572
pfkC
ADP-specific phosphofructokinase; Catalyzes the phosphorylation of fructose 6-phosphate to fructose 1,6-bisphosphate using ADP as the phosphate donor.
  
     0.572
CL1_1786
Hypothetical protein; COG2014.
  
    0.570
CL1_0925
ABC type dipeptide/oligopeptide/nickel transporter permease 3; COG0601.
       0.543
CL1_1818
CRISPR-associated Cas6 family protein 2; COG1583.
 
   
 0.540
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.