CL1_0927 protein (Thermococcus cleftensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CL1_0927

alanyl-tRNA synthetase 1; COG2872. (408 aa)

Predicted Functional Partners:

atpD

0.866

atpC

0.860

atpB

0.854

atpF

0.840

atpE

0.837

CL1_0934

0.827

secD

0.806

CL1_0935

0.802

CL1_0936

0.802

atpA

0.794

Your Current Organism:

Thermococcus cleftensis

NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CL1_0927	CL1_0934	CL1_0927	CL1_0934	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit K; COG0636.	0.827
CL1_0927	CL1_0935	CL1_0927	CL1_0935	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	0.802
CL1_0927	CL1_0936	CL1_0927	CL1_0936	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit H.	0.802
CL1_0927	atpA	CL1_0927	CL1_0930	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.794
CL1_0927	atpB	CL1_0927	CL1_0929	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.854
CL1_0927	atpC	CL1_0927	CL1_0932	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.860
CL1_0927	atpD	CL1_0927	CL1_0928	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.866
CL1_0927	atpE	CL1_0927	CL1_0933	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.837
CL1_0927	atpF	CL1_0927	CL1_0931	alanyl-tRNA synthetase 1; COG2872.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.840
CL1_0927	secD	CL1_0927	CL1_0938	alanyl-tRNA synthetase 1; COG2872.	Putative preprotein translocase subunit SecD; Involved in protein export.	0.806
CL1_0934	CL1_0927	CL1_0934	CL1_0927	V-type ATP synthase subunit K; COG0636.	alanyl-tRNA synthetase 1; COG2872.	0.827
CL1_0934	CL1_0935	CL1_0934	CL1_0935	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit I; COG1269; Belongs to the V-ATPase 116 kDa subunit family.	0.999
CL1_0934	CL1_0936	CL1_0934	CL1_0936	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit H.	0.990
CL1_0934	atpA	CL1_0934	CL1_0930	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
CL1_0934	atpB	CL1_0934	CL1_0929	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
CL1_0934	atpC	CL1_0934	CL1_0932	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
CL1_0934	atpD	CL1_0934	CL1_0928	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
CL1_0934	atpE	CL1_0934	CL1_0933	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
CL1_0934	atpF	CL1_0934	CL1_0931	V-type ATP synthase subunit K; COG0636.	V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
CL1_0934	secD	CL1_0934	CL1_0938	V-type ATP synthase subunit K; COG0636.	Putative preprotein translocase subunit SecD; Involved in protein export.	0.829