Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_0954Hypothetical protein containing NGG1p interacting factor 3-domain; COG0327. (250 aa)    
Predicted Functional Partners:
CL1_0953
Histone acetyltransferase-like protein; COG1243.
       0.837
CL1_0948
Hypothetical protein; COG0727.
 
     0.667
CL1_0947
Hypothetical protein containing ribosome biogenesis factor; COG1374.
  
    0.582
CL1_1397
Putative aminotransferase 4; COG1167.
 
    0.543
CL1_0727
Putative metal-dependent phosphohydrolase; COG3294.
  
     0.411
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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