STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0967Hypothetical protein containing FAD/NAD(P)-binding domain 2; COG2509. (487 aa)    
Predicted Functional Partners:
CL1_0966
Hypothetical protein; COG0517.
       0.828
CL1_0965
Putative Na+/H+ antiporter 1; COG0475.
       0.815
CL1_1092
Nol1-nop2-sun family nucleolar protein III; COG0144; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.700
CL1_0970
Hypothetical protein; COG0037.
       0.658
CL1_1094
Hypothetical protein; COG5608.
       0.497
CL1_0784
5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase 3; COG1759.
 
     0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.