STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0970Hypothetical protein; COG0037. (307 aa)    
Predicted Functional Partners:
CL1_1442
tRNA methyltransferase, GCD14 type; COG2519.
 
  
 0.691
CL1_0967
Hypothetical protein containing FAD/NAD(P)-binding domain 2; COG2509.
       0.658
CL1_0969
Hypothetical protein; COG1947.
       0.636
CL1_0971
Hypothetical protein containing peptidase S8-domain; COG1404.
       0.598
CL1_0999
Putative ATPase 2; COG0037.
  
  
 
0.576
CL1_0965
Putative Na+/H+ antiporter 1; COG0475.
  
  
 0.454
CL1_0968
Hypothetical protein.
       0.437
CL1_0966
Hypothetical protein; COG0517.
       0.407
truD
Putative tRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
 
 0.404
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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