STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0975Hypothetical protein containing HAD-like domain 5; COG1011. (229 aa)    
Predicted Functional Partners:
CL1_0974
Hypothetical protein; COG0170.
 
     0.932
CL1_0976
Hypothetical protein containing HAD-like domain 6.
       0.839
CL1_0977
Putative Na+/H+ antiporter 2, NapA type; COG0475.
       0.839
mfnA
Tyrosine decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
    0.813
CL1_0972
4-alpha-Glucanotransferase; COG1449.
       0.658
CL1_1873
Hypothetical protein; COG1011.
  
     0.576
CL1_0979
Putative ATPase (AAA+ superfamily) 6; COG1672.
       0.431
CL1_0696
Hypothetical protein containing HAD-like domain 4; COG1011.
  
     0.404
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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