STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mfnATyrosine decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily. (384 aa)    
Predicted Functional Partners:
CL1_1122
4-aminobutyrate aminotransferase 2; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.941
CL1_0205
4-aminobutyrate aminotransferase 1; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.940
CL1_1361
Hypothetical protein; COG1701.
 
  
 0.931
CL1_0744
Putative carbon-nitrogen hydrolase; COG0388.
  
 
 0.923
hisC
Putative histidinol-phosphate transaminase; COG0079.
    
 0.908
CL1_2024
Putative aminotransferase 1; COG0079.
    
 0.908
CL1_0496
Putative aminotransferase 3; COG0436.
 
 
 0.864
CL1_1601
Asparagine synthase; COG0367.
 
  
 0.864
CL1_1333
L-asparaginase; COG1446.
  
  
 0.859
CL1_0800
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
 
  
  0.830
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (34%) [HD]