STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_0991Hypothetical protein. (445 aa)    
Predicted Functional Partners:
CL1_0992
Hypothetical protein; COG0457.
 
     0.806
CL1_1998
Glucose-1-dehydrogenase; COG1028.
  
 
 0.689
CL1_1356
Short-chain alcohol dehydrogenase; COG1028.
  
 
 0.678
CL1_0985
Hypothetical protein; COG3379.
 
     0.654
CL1_1030
Hypothetical protein; COG0641.
 
 
 0.592
CL1_1162
Radical SAM domain protein; COG0641.
 
 
 0.587
CL1_0993
Putative glycosyl transferase, family 2 protein 1; COG0463.
     
 0.572
CL1_0254
Ornithine carbamoyltransferase; COG0078; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
   
  
 0.553
CL1_0168
Hypothetical protein containing peptidase M50 domain 1; COG0750.
 
 
   0.532
CL1_0440
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.532
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.