Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CL1_0999Putative ATPase 2; COG0037. (323 aa)    
Predicted Functional Partners:
CL1_1001
Hypothetical protein.
       0.844
CL1_0998
Hypothetical protein containing peptidase M50 domain 2; COG0750.
  
  
 0.665
CL1_1002
Hypothetical protein; COG1472.
  
    0.610
CL1_0953
Histone acetyltransferase-like protein; COG1243.
  
 
 0.599
CL1_0970
Hypothetical protein; COG0037.
  
  
 
0.576
CL1_1000
Putative ATPase 3; COG1373.
       0.565
CL1_1100
Hypothetical protein; COG0476.
 
 
 0.558
CL1_1442
tRNA methyltransferase, GCD14 type; COG2519.
 
  
 0.545
CL1_0997
Putative glycosyl transferase, family 2 protein 3; COG0463.
  
  
 0.511
CL1_0996
Hypothetical protein; COG3119.
  
    0.506
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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