STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1000Putative ATPase 3; COG1373. (424 aa)    
Predicted Functional Partners:
CL1_1001
Hypothetical protein.
       0.775
CL1_0866
Hypothetical protein; COG1373.
  
     0.740
CL1_1986
Hypothetical protein; COG1373.
  
     0.701
CL1_1735
Hypothetical protein; COG1373.
  
     0.690
CL1_1002
Hypothetical protein; COG1472.
       0.652
CL1_2001
Hypothetical protein; COG1373.
  
     0.592
CL1_1004
Transcription regulator, ArsR family 6; COG1846.
       0.568
CL1_0999
Putative ATPase 2; COG0037.
       0.566
CL1_1003
Hypothetical protein.
       0.566
CL1_0997
Putative glycosyl transferase, family 2 protein 3; COG0463.
 
     0.472
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.