STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1008Putative geranylgeranyl hydrogenase; COG0644. (370 aa)    
Predicted Functional Partners:
CL1_1009
Hypothetical protein; COG4043.
 
     0.798
pcp
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.650
CL1_0718
Prenyltransferase UbiA-like protein; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.600
CL1_1006
Hypothetical protein; COG2433.
       0.527
CL1_1422
4-hydroxybenzoate octaprenyltransferase; COG0382.
 
  
 0.526
CL1_1601
Asparagine synthase; COG0367.
 
  
 0.476
CL1_1207
Hypothetical protein; COG1233.
 
  
 0.471
CL1_0387
Ferredoxin; COG1145.
 
  
 0.463
CL1_1342
Hypothetical protein containing HAD-like domain 7; COG0463.
 
   
 0.437
CL1_1005
Hypothetical protein.
       0.428
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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