STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1022Hypothetical protein containing Type II secretion system F domain 2; COG2064. (354 aa)    
Predicted Functional Partners:
CL1_1021
Hypothetical protein containing Type II secretion system F domain 1; COG2064.
 
  
0.990
CL1_1023
Hypothetical protein containing Type II secretion system E domain; COG4962.
 
  
 0.973
CL1_1025
Hypothetical protein; COG1627.
     
 0.911
CL1_1024
Hypothetical protein.
       0.902
CL1_1026
Hypothetical protein.
       0.829
CL1_1027
Hypothetical protein; COG1161.
       0.829
CL1_1031
Hypothetical protein; COG0116.
       0.658
CL1_0635
Predicetd ATPase; COG0630.
 
     0.471
CL1_0698
DNA polymerase, family B; COG0417.
 
   
 0.407
CL1_1629
ATPase, MinD family 3; COG0455.
 
  
 0.402
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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