STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1028Dipeptide/oligopeptide ABC transporter permease 3; COG1173. (416 aa)    
Predicted Functional Partners:
CL1_1029
Dipeptide/oligopeptide ABC transporter permease 4; COG0601.
 
  
 0.958
CL1_0914
Dipeptide/oligopeptide ABC transporter ATPase 4; COG0444.
 
  
 0.868
CL1_1449
Dipeptide/oligopeptide ABC transporter ATPase 1; COG0444.
 
  
 0.864
CL1_0916
Dipeptide/oligopeptide ABC transporter permease 2; COG0601.
 
  
 0.861
CL1_1447
Dipeptide/oligopeptide ABC transporter permease 7; COG0601.
 
  
 0.849
CL1_0925
ABC type dipeptide/oligopeptide/nickel transporter permease 3; COG0601.
 
  
 0.797
CL1_0913
Dipeptide/oligopeptide ABC transporter ATPase 3; COG4608.
 
 
 0.791
CL1_1450
Dipeptide/oligopeptide ABC transporter ATPase 2; COG4608.
 
 
 0.779
CL1_1446
Dipeptide ABC transporter substrate binding protein; COG0747.
 
 
 0.760
CL1_0921
ABC type dipeptide/oligopeptide/nickel transporter permease 1; COG0601.
 
  
 0.658
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.