STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1029Dipeptide/oligopeptide ABC transporter permease 4; COG0601. (343 aa)    
Predicted Functional Partners:
CL1_1028
Dipeptide/oligopeptide ABC transporter permease 3; COG1173.
 
 
 0.965
CL1_1448
Dipeptide/oligopeptide ABC transporter permease 8; COG1173.
 
 
 0.884
CL1_1446
Dipeptide ABC transporter substrate binding protein; COG0747.
 
 
 0.841
CL1_0915
Dipeptide/oligopeptide ABC transporter permease 1; COG1173.
 
 
 0.838
CL1_0926
ABC type dipeptide/oligopeptide/nickel transporter permease 4; COG1173.
 
 
 0.837
CL1_0922
ABC type dipeptide/oligopeptide/nickel transporter permease 2; COG1173.
 
 
 0.822
CL1_1167
Dipeptide/oligopeptide ABC transporter permease 6; COG1173.
 
 
 0.811
CL1_0914
Dipeptide/oligopeptide ABC transporter ATPase 4; COG0444.
 
 
 0.794
CL1_1449
Dipeptide/oligopeptide ABC transporter ATPase 1; COG0444.
 
 
 0.794
CL1_0913
Dipeptide/oligopeptide ABC transporter ATPase 3; COG4608.
 
 
 0.637
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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