STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1037Transcription regulator, ArsR family 7; COG0640. (191 aa)    
Predicted Functional Partners:
CL1_1038
Hypothetical protein; COG1888.
 
     0.912
CL1_1039
Putative transcription regulator, ArsR family; COG0640.
 
    
0.907
CL1_1036
succinyl-CoA synthetase large subunit; COG1042.
       0.813
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp).
 
  
 0.522
CL1_1543
GNAT family acetyltransferase 2; COG0454.
  
   
 0.505
sat
Sulfate adenylyltransferase; COG2046; Belongs to the sulfate adenylyltransferase family.
  
   
 0.502
CL1_0494
Hypothetical protein; COG1226.
  
     0.489
CL1_1040
Cytoplasmic alpha-amylase; COG0366.
       0.475
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
     0.431
thrS
threonyl-tRNA synthetase; COG0441; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
   
 0.421
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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