STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1039Putative transcription regulator, ArsR family; COG0640. (185 aa)    
Predicted Functional Partners:
CL1_1038
Hypothetical protein; COG1888.
 
     0.869
CL1_1037
Transcription regulator, ArsR family 7; COG0640.
 
    
0.795
CL1_1543
GNAT family acetyltransferase 2; COG0454.
  
   
 0.575
CL1_1036
succinyl-CoA synthetase large subunit; COG1042.
       0.555
CL1_0494
Hypothetical protein; COG1226.
  
     0.533
CL1_1040
Cytoplasmic alpha-amylase; COG0366.
       0.510
CL1_1870
Aromatic amino acid permease; COG0814.
  
     0.438
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.416
CL1_1075
Hypothetical protein; COG0595.
 
     0.406
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp).
  
  
 0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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