STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1040Cytoplasmic alpha-amylase; COG0366. (457 aa)    
Predicted Functional Partners:
CL1_0884
Cyclomaltodextrinase; COG0366.
  
  
 0.945
CL1_0091
Pullulanase type II; COG0366.
  
  
 0.939
CL1_0972
4-alpha-Glucanotransferase; COG1449.
     
 0.918
CL1_0412
Alpha-glucan phosphorylase; COG0058.
     
  0.900
CL1_0546
Glycogen branching enzyme; COG1543; Belongs to the glycosyl hydrolase 57 family.
     
  0.900
CL1_0850
Glycoside hydrolase family 57 protein; COG0366.
  
   
 0.605
CL1_1039
Putative transcription regulator, ArsR family; COG0640.
       0.510
CL1_1038
Hypothetical protein; COG1888.
       0.496
CL1_1275
Cyclomaltodextrin glucanotransferase; COG0366.
 
   
 0.465
CL1_1037
Transcription regulator, ArsR family 7; COG0640.
       0.456
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.