STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1076Hypothetical protein; COG2105. (108 aa)    
Predicted Functional Partners:
CL1_1075
Hypothetical protein; COG0595.
       0.774
CL1_1074
Hypothetical protein.
       0.592
CL1_0507
Glycosyl transferase family protein 6; COG1807.
  
     0.528
hisI
Hypothetical protein; COG0139; In the N-terminal section; belongs to the PRA-CH family.
 
     0.502
CL1_1815
CRISPR-associated protein Cas5; COG1688.
  
     0.440
CL1_1964
Hypothetical protein; COG1672.
 
     0.410
CL1_0172
Glycosyl transferase family protein 5; COG5305.
  
     0.405
CL1_0376
CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.403
CL1_0325
AP endonuclease; COG1082.
 
     0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.