STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1103Hypothetical protein; COG0535. (310 aa)    
Predicted Functional Partners:
CL1_1102
Molybdopterin converting factor subunit 2; COG0314.
  
  
 0.652
CL1_0507
Glycosyl transferase family protein 6; COG1807.
 
     0.621
CL1_1815
CRISPR-associated protein Cas5; COG1688.
  
     0.606
CL1_0376
CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.580
CL1_0386
Transcription regulator, ArsR family 5; COG1777.
  
     0.564
CL1_0819
Hypothetical protein; COG0457.
 
   
 0.564
CL1_0839
Putative oligosaccharyl transferase, STT3 subunit 1; COG1287.
 
   
 0.556
CL1_1692
Hypothetical protein; COG1967.
  
     0.530
glkA
ADP-dependent glucokinase; Catalyzes the phosphorylation of D-glucose to D-glucose 6- phosphate using ADP as the phosphate donor.
  
     0.528
CL1_0494
Hypothetical protein; COG1226.
  
    0.513
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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