STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1121Hypothetical protein; COG4720. (199 aa)    
Predicted Functional Partners:
CL1_1695
Cobalt ABC transporter permease 2, CbiQ; COG0619.
 
 
 0.781
CL1_1122
4-aminobutyrate aminotransferase 2; COG0160; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.685
CL1_1696
Cobalt ABC transporter ATPase 2; COG1122.
 
 
 
 0.664
CL1_0464
Cobalt ABC transporter permease 1, CbiQ; COG0619.
  
 
 0.660
CL1_0296
Cobalt transporter ATP-binding protein; COG1122.
 
 
 
 0.647
CL1_0465
Cobalt ABC transporter ATPase 1; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 
 0.610
CL1_1946
Hydrogenase expression/formation protein HypE 3; COG0309.
 
    0.450
CL1_1123
Thioredoxin reductase; COG0492.
  
    0.438
CL1_0035
Putative phosphomethylpyrimidine kinase; COG1992.
     
 0.418
CL1_0103
Hydrogenase expression/formation protein HypE 1; COG0309.
 
    0.417
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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