STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1126RNA-binding protein containing THUMP domain; COG1818. (160 aa)    
Predicted Functional Partners:
CL1_1124
Hypothetical protein; COG1988.
       0.649
CL1_1125
Putative ATPase (AAA+ superfamily) 7.
       0.649
tmcA
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
   
 0.644
CL1_1418
Hypothetical protein; COG2247.
  
     0.617
CL1_0359
RNA binding protein containing KH domain; COG0195.
  
     0.592
CL1_1169
Protein kinase-like protein; COG2112.
  
     0.582
CL1_0602
Hypothetical protein; COG1422.
  
     0.574
CL1_0182
Hypothetical protein; COG1817.
  
     0.564
CL1_1123
Thioredoxin reductase; COG0492.
       0.549
CL1_1127
Rubrerythrin-like protein 2; COG1633.
       0.540
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.