STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1131NADH-ubiquinone oxidoreductase subunit 2; COG3261. (425 aa)    
Predicted Functional Partners:
CL1_1133
NADH-ubiquinone oxidoreductase subunit 4; COG3260.
 
 0.999
CL1_1130
NADH:ubiquinone oxidoreductase, subunit 1; COG0650.
 
 
 0.985
CL1_0199
NADH dehydrogenase subunit B; COG0377; Belongs to the complex I 20 kDa subunit family.
   
 0.968
CL1_1129
Hypothetical protein; COG1143.
 
 
 0.965
CL1_1132
NADH-ubiquinone oxidoreductase subunit 3; COG3262.
 
 
 
 0.956
CL1_1135
Hypothetical protein; COG0651.
 
 
 0.951
CL1_0198
NADH dehydrogenase subunit H; COG0650.
 
 
 0.925
CL1_0197
NADH dehydrogenase subunit M; COG0651.
 
 
 0.869
CL1_1428
Putative monovalent cation/H+ antiporter 3 subunit D; COG0651.
 
 
 0.857
CL1_0194
Putative monovalent cation/H+ antiporter 1 subunit B; COG2111.
   
   0.855
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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