Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CL1_1145Formate transporter; COG2116. (329 aa)    
Predicted Functional Partners:
CL1_1147
Hypothetical protein containing ferredoxins domain 3; COG0437.
     
 0.941
CL1_1148
Formate hydrogen lyase subunit alpha; COG0243.
 
  
 0.891
CL1_1143
Hypothetical protein containing ferredoxins domain 1; COG0437.
     
 0.814
CL1_1144
Putative glutamate synthase subunit beta; COG0493.
     
 0.813
CL1_1146
Hypothetical protein containing ferredoxins domain 2; COG1143.
     
 0.798
CL1_1569
Small heat shock protein, Hsp20 type; COG0071; Belongs to the small heat shock protein (HSP20) family.
     
 0.785
CL1_1863
Putative formate dehydrogenase; COG0243.
  
  
 0.738
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
      
 0.707
CL1_1058
Cell division control protein 6; Involved in regulation of DNA replication.
      
 0.699
CL1_0006
Hypothetical protein containing prefoldin beta-like domain; COG0206.
    
 
 0.652
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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