STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1150Coenzyme F420 hydrogenase subunit gamma (frhG); COG1941. (226 aa)    
Predicted Functional Partners:
CL1_1149
Coenzyme F420-reducing hydrogenase subunit beta; COG1035.
 0.999
CL1_1151
Coenzyme F420 hydrogenase subunit alpha (frhA); COG3259.
 
 0.999
CL1_0644
Sulfhydrogenase II, alpha chain; COG3259.
 
 
 0.885
CL1_0144
Cytosolic NiFe-hydrogenase subunit alpha; COG3259.
 
 
 0.871
CL1_0638
Glutamate synthase beta chain-related oxidoreductase containing 2Fe-2S and 4Fe-4S clusters; COG0493.
   
 
 0.803
CL1_0640
NADH-quinone oxidoreductase subunit E; COG1905.
   
 
 0.756
CL1_1148
Formate hydrogen lyase subunit alpha; COG0243.
   
 
 0.754
CL1_1144
Putative glutamate synthase subunit beta; COG0493.
   
   0.703
CL1_1141
Putative monovalent cation/H+ antiporter 2 subunit F; COG2212.
     
 0.610
CL1_1142
Putative monovalent cation/H+ antiporter 2 subunit E; COG1863.
     
 0.610
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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