STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1150Coenzyme F420 hydrogenase subunit gamma (frhG); COG1941. (226 aa)    
Predicted Functional Partners:
CL1_1149
Coenzyme F420-reducing hydrogenase subunit beta; COG1035.
 0.999
CL1_1151
Coenzyme F420 hydrogenase subunit alpha (frhA); COG3259.
 
 0.999
CL1_0644
Sulfhydrogenase II, alpha chain; COG3259.
 
 
 0.837
CL1_0144
Cytosolic NiFe-hydrogenase subunit alpha; COG3259.
 
 
 0.816
CL1_0639
NADH-quinone oxidoreductase subunit F; COG1894.
   
 
 0.590
CL1_0640
NADH-quinone oxidoreductase subunit E; COG1905.
   
 
 0.585
CL1_0483
Hydrogenase maturation protease; COG0680.
 
  
 0.537
CL1_1790
Hypothetical protein; COG1149.
 
 
   0.522
CL1_1791
Hypothetical protein; COG1149.
 
 
   0.522
CL1_1147
Hypothetical protein containing ferredoxins domain 3; COG0437.
     
 0.494
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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