STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1152Nucleic acid-binding protein; COG3269. (69 aa)    
Predicted Functional Partners:
CL1_1153
MiaB-like tRNA modifying enzyme, archaeal-type; COG0621.
       0.658
purO
Putative Inosine monophosphate cyclohydrolase; Catalyzes the cyclization of 5-formylamidoimidazole-4- carboxamide ribonucleotide to IMP.
  
     0.616
CL1_1149
Coenzyme F420-reducing hydrogenase subunit beta; COG1035.
       0.568
CL1_1150
Coenzyme F420 hydrogenase subunit gamma (frhG); COG1941.
       0.568
CL1_1151
Coenzyme F420 hydrogenase subunit alpha (frhA); COG3259.
       0.568
rnp2
Ribonuclease P protein component 2; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
  
     0.536
CL1_1709
Hypothetical protein; COG1432.
  
     0.452
CL1_1708
Hypothetical protein; COG1432.
  
     0.450
CL1_0211
Glutaredoxin/thioredoxin-like protein; COG0526.
  
   
 0.414
CL1_0553
Hypothetical protein; COG1325.
  
     0.409
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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