STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1160ABC type transporter permease 1; COG0842. (265 aa)    
Predicted Functional Partners:
CL1_1161
ABC type transporter ATPase 2; COG1131.
 
  
 0.940
CL1_1159
Phosphate transport system regulator PhoU; COG1392.
  
    0.646
CL1_1158
Phosphate transporter protein; COG0306.
     
 0.645
CL1_1346
Putative transcription regulator, penicillinase repressor family; COG3682.
 
     0.595
CL1_1162
Radical SAM domain protein; COG0641.
       0.532
CL1_1556
NAD(P)H-flavin oxidoreductase; COG0778.
  
  
 0.509
CL1_1659
Hypothetical protein; COG0778.
  
  
 0.509
CL1_1846
NAD(P)H oxidase; COG0778.
  
  
 0.509
CL1_0031
Putative membrane-associated metalloprotease; COG1266.
  
  
 0.465
CL1_1002
Hypothetical protein; COG1472.
  
  
 0.465
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.