STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1164ABC type transporter permease 2; COG1277. (533 aa)    
Predicted Functional Partners:
CL1_1165
ABC type transporter permease 3; COG1277.
      
0.799
CL1_1161
ABC type transporter ATPase 2; COG1131.
  
 
 0.645
CL1_1166
Dipeptide/oligopeptide ABC transporter permease 5; COG0601.
       0.605
CL1_1167
Dipeptide/oligopeptide ABC transporter permease 6; COG1173.
       0.605
CL1_1163
Hypothetical protein; COG4152.
       0.565
CL1_0334
Multidrug ABC transporter ATPase 1; COG1131.
  
 
 0.556
CL1_1981
ABC type multidrug transporter ATPase 4; COG1131.
  
 
 0.556
CL1_1215
Multidrug ABC transporter ATPase 2; COG1131.
  
 
 0.549
CL1_1457
Putative ABC type transporter, ATPase; COG1131.
  
 
 0.549
CL1_1478
ABC type multidrug transporter ATPase 1; COG1131.
  
 
 0.549
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.