STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1_1168Transcription regulator, AsnC family 3; COG1522. (75 aa)    
Predicted Functional Partners:
CL1_1169
Protein kinase-like protein; COG2112.
 
     0.788
CL1_1386
Transcription regulator, AsnC family 6; COG1522.
   
 
 0.518
CL1_1595
Nucleotidyltransferase; COG2413.
  
     0.458
CL1_0206
Transcription regulator, AsnC family 1; COG1522.
   
 
 0.415
CL1_0581
Transcription regulator, Lrp/AsnC family 1; COG1522.
   
 
 0.415
CL1_1107
Transcription regulator, AsnC family 2; COG1522.
   
 
 0.415
CL1_1203
Transcription regulator, AsnC family 4; COG1522.
   
 
 0.415
CL1_1690
Transcription regulator, Lrp/AsnC family 2; COG1522.
   
 
 0.415
CL1_1126
RNA-binding protein containing THUMP domain; COG1818.
  
     0.407
tiaS
Hypothetical protein; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
 
     0.400
Your Current Organism:
Thermococcus cleftensis
NCBI taxonomy Id: 163003
Other names: DSM 27260, KACC 17922, T. cleftensis, Thermococcus cleftensis Hensley et al. 2014, Thermococcus sp. CL1, strain CL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.